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  5. LOC_Os04g37950.1

LOC_Os04g37950.1 (UBP3, ATUBP3, LOC_Os04g37950)


Aliases : UBP3, ATUBP3, LOC_Os04g37950

Description : deubiquitinase (UBP3-4)


Gene families : OG0003560 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003560_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g37950.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00170920 UBP3, ATUBP3,... Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
Aob_g05077 UBP3, ATUBP3 deubiquitinase *(UBP3-4) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14444 UBP3, ATUBP3 deubiquitinase *(UBP3-4) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G069000.1 UBP3, ATUBP3,... deubiquitinase *(UBP3-4) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.78 ATUBP4, UBP4 Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.79 UBP3, ATUBP3 Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g00708 UBP3, ATUBP3 deubiquitinase *(UBP3-4) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04504 UBP3, ATUBP3 deubiquitinase *(UBP3-4) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24730 UBP3, ATUBP3 deubiquitinase *(UBP3-4) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016433 UBP3, ATUBP3 deubiquitinase *(UBP3-4) & original description: CDS=179-1312 0.03 OrthoFinder output from all 47 species
Zm00001e007943_P001 ATUBP4, UBP4,... deubiquitinase (UBP3-4) 0.03 OrthoFinder output from all 47 species
Zm00001e040991_P002 ATUBP4, UBP4,... deubiquitinase (UBP3-4) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 25 360
No external refs found!