LOC_Os04g35420.1 (ATRECQ4A, ATSGS1,...)

Aliases : ATRECQ4A, ATSGS1, RECQ4A, LOC_Os04g35420

Description : helicase component RecQ4A of RTR Holliday junction dissolution complex

Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g35420.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00118p00027960	ATRECQ4A,...	Cell cycle.mitosis and meiosis.meiotic...	0.02	OrthoFinder output from all 47 species
Adi_g020335	RECQI1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01082	MED34, ATRECQ2, RECQL2	component *(MED34) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Aop_g14321	RecQl3, ATRECQ3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g22121	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.02	OrthoFinder output from all 47 species
Azfi_s0087.g042358	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
Ceric.17G060200.1	ATRECQ4A,...	helicase component *(RecQ4A) of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species
Ceric.34G005600.1	RECQI1, Ceric.34G005600	not classified & original description: pacid=50623064...	0.05	OrthoFinder output from all 47 species
Cre03.g178950	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre04.g219750	ATRECQ4A, ATSGS1, RECQ4A	Cell cycle.mitosis and meiosis.meiotic...	0.03	OrthoFinder output from all 47 species
GSVIVT01023325001	ATRECQ4A, ATSGS1, RECQ4A	Cell cycle.mitosis and meiosis.meiotic...	0.03	OrthoFinder output from all 47 species
Gb_08699	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
Len_g14718	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
Len_g56734	RECQI1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g16228	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
MA_10435954g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
MA_10436537g0010	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.06	OrthoFinder output from all 47 species
MA_30494g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_361558g0010	ATRECQ4A, ATSGS1, RECQ4A	ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp4g14290.1	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.06	OrthoFinder output from all 47 species
Mp4g16510.1	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g27927	RECQI1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g41299	RECQI1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g41947	MED34, ATRECQ2, RECQL2	component *(MED34) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Sam_g25559	No alias	helicase component *(RecQ4A) of RTR Holliday junction...	0.02	OrthoFinder output from all 47 species
Smo98462	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc01g100280.4.1	RECQI1, Solyc01g100280	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Solyc01g103960.3.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006471	obsolete protein ADP-ribosylation	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043462	regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051095	regulation of helicase activity	IEP	HCCA
BP	GO:0051097	negative regulation of helicase activity	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905774	regulation of DNA helicase activity	IEP	HCCA
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002121	HRDC_dom	995	1061
IPR011545	DEAD/DEAH_box_helicase_dom	440	608
IPR001650	Helicase_C	645	750
IPR032284	RecQ_Zn-bd	763	841
IPR018982	RQC_domain	848	964

External Links

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LOC_Os04g35420.1 (ATRECQ4A, ATSGS1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation