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  5. LOC_Os04g33980.1

LOC_Os04g33980.1 (LOC_Os04g33980)


Aliases : LOC_Os04g33980

Description : SMXL strigolactone signal transducer


Gene families : OG0002073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002073_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g33980.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00252890 evm_27.TU.AmTr_v1... Phytohormones.strigolactone.perception and signal... 0.06 OrthoFinder output from all 47 species
AMTR_s00030p00222400 evm_27.TU.AmTr_v1... Phytohormones.strigolactone.perception and signal... 0.06 OrthoFinder output from all 47 species
AT3G52490 No alias Double Clp-N motif-containing P-loop nucleoside... 0.04 OrthoFinder output from all 47 species
Adi_g116697 No alias strigolactone signal modulator *(SMXL) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01029304001 No alias Phytohormones.strigolactone.perception and signal... 0.03 OrthoFinder output from all 47 species
GSVIVT01034648001 No alias Phytohormones.strigolactone.perception and signal... 0.03 OrthoFinder output from all 47 species
Gb_09621 No alias SMXL strigolactone signal transducer 0.03 OrthoFinder output from all 47 species
Gb_33499 No alias SMXL strigolactone signal transducer 0.05 OrthoFinder output from all 47 species
MA_15290g0010 No alias Protein SUPPRESSOR OF MAX2 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_800170g0010 No alias Protein SMAX1-like OS=Oryza sativa subsp. japonica... 0.06 OrthoFinder output from all 47 species
Ore_g04615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08821 No alias strigolactone signal modulator *(SMXL) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020044 No alias strigolactone signal modulator *(SMXL) & original... 0.03 OrthoFinder output from all 47 species
Solyc01g007260.3.1 Solyc01g007260 SMXL strigolactone signal transducer 0.07 OrthoFinder output from all 47 species
Solyc05g055200.4.1 Solyc05g055200 SMXL strigolactone signal transducer 0.05 OrthoFinder output from all 47 species
Solyc11g006650.3.1 Solyc11g006650 SMXL strigolactone signal transducer 0.07 OrthoFinder output from all 47 species
Zm00001e008174_P001 Zm00001e008174 SMXL strigolactone signal transducer 0.06 OrthoFinder output from all 47 species
Zm00001e014748_P001 Zm00001e014748 SMXL strigolactone signal transducer 0.09 OrthoFinder output from all 47 species
Zm00001e020895_P001 Zm00001e020895 SMXL strigolactone signal transducer 0.03 OrthoFinder output from all 47 species
Zm00001e024175_P002 Zm00001e024175 SMXL strigolactone signal transducer 0.04 OrthoFinder output from all 47 species
Zm00001e040845_P001 Zm00001e040845 SMXL strigolactone signal transducer 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 23 53
IPR004176 Clp_R_dom 140 175
No external refs found!