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Aliases : LOC_Os04g31950
Description : component LSm6 of U6-associated LSm accessory ribonucleoprotein complex
Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G43810 | No alias | Small nuclear ribonucleoprotein family protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g129920 | No alias | component *(LSm6) of U6-associated LSm accessory... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g63045 | RUXF | component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s2653.g112503 | No alias | component *(LSm6) of U6-associated LSm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.36G038500.1 | RUXF, Ceric.36G038500 | component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000944.19 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.06 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001355.5 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.05 | OrthoFinder output from all 47 species | |
| Cre03.g151750 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.09 | OrthoFinder output from all 47 species | |
| Cre05.g241300 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01003994001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01038197001 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.03 | OrthoFinder output from all 47 species | |
| MA_26016g0010 | RUXF | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.03 | OrthoFinder output from all 47 species | |
| Mp5g02830.1 | No alias | component LSm6 of U6-associated LSm accessory... | 0.06 | OrthoFinder output from all 47 species | |
| Mp6g01610.1 | No alias | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.07 | OrthoFinder output from all 47 species | |
| Msp_g06683 | No alias | component *(LSm6) of U6-associated LSm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c12_17630V3.1 | RUXF, Pp3c12_17630 | small nuclear ribonucleoprotein F | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c18_1280V3.1 | Pp3c18_1280 | Small nuclear ribonucleoprotein family protein | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c4_14270V3.1 | RUXF, Pp3c4_14270 | small nuclear ribonucleoprotein F | 0.02 | OrthoFinder output from all 47 species | |
| Smo228181 | RUXF | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
| Smo268399 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g47726 | RUXF | component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025108_P001 | RUXF, Zm00001e025108 | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000439 | transcription factor TFIIH core complex | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006289 | nucleotide-excision repair | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 23 | 87 |
| No external refs found! |