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  5. LOC_Os04g31900.1

LOC_Os04g31900.1 (LOC_Os04g31900)


Aliases : LOC_Os04g31900

Description : transcription factor (CAMTA)


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g31900.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00173360 CAMTA3, SR1,... RNA biosynthesis.transcriptional activation.CAMTA... 0.02 OrthoFinder output from all 47 species
AT1G67310 No alias Calmodulin-binding transcription activator protein with... 0.05 OrthoFinder output from all 47 species
AT2G22300 CAMTA3, SR1 signal responsive 1 0.03 OrthoFinder output from all 47 species
AT4G16150 No alias calmodulin binding;transcription regulators 0.04 OrthoFinder output from all 47 species
AT5G64220 No alias Calmodulin-binding transcription activator protein with... 0.03 OrthoFinder output from all 47 species
Aev_g01603 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07423 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11078 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22501 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51851.t1 Aspi01Gene51851 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0305.g063898 CAMTA3, SR1 CAMTA-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.12G055700.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.24G013800.1 CAMTA3, SR1,... CAMTA-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.31G019600.1 Ceric.31G019600 CAMTA-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g13973 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002635001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01004860001 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.06 OrthoFinder output from all 47 species
GSVIVT01010510001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.07 OrthoFinder output from all 47 species
GSVIVT01017670001 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.1 OrthoFinder output from all 47 species
Gb_04014 No alias transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Lfl_g06256 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34966 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Mp7g03150.1 CAMTA3, SR1 transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010659 No alias CAMTA-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g07183 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g099340.3.1 Solyc12g099340 transcription factor (CAMTA) 0.02 OrthoFinder output from all 47 species
Spa_g21923 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g30019 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002794_P002 CAMTA3, SR1,... transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Zm00001e008367_P002 Zm00001e008367 transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
Zm00001e012888_P005 CAMTA3, SR1,... transcription factor (CAMTA) 0.05 OrthoFinder output from all 47 species
Zm00001e037974_P002 CAMTA3, SR1,... transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 665 742
IPR002909 IPT_dom 451 532
IPR005559 CG-1_dom 13 126
IPR000048 IQ_motif_EF-hand-BS 884 904
IPR000048 IQ_motif_EF-hand-BS 862 880
No external refs found!