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  5. LOC_Os04g31620.1

LOC_Os04g31620.1 (LOC_Os04g31620)


Aliases : LOC_Os04g31620

Description : pre-mRNA splicing factor (SF1)


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os04g31620.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g06469 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29184 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20547 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033666001 No alias Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g74340.1 LOC_Os01g74340 Glycine-rich RNA-binding protein 2, mitochondrial... 0.04 OrthoFinder output from all 47 species
Ore_g15800 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14490 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36205 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 76 145
No external refs found!