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  5. LOC_Os04g25550.1

LOC_Os04g25550.1 (SPT16, LOC_Os04g25550)


Aliases : SPT16, LOC_Os04g25550

Description : component SPT16 of FACT histone chaperone complex


Gene families : OG0002057 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002057_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g25550.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00682p00010920 SPT16,... Chromatin organisation.histone chaperone activities.FACT... 0.05 OrthoFinder output from all 47 species
AT4G10710 SPT16 global transcription factor C 0.05 OrthoFinder output from all 47 species
Adi_g004008 SPT16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g049276 SPT16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g33291 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Ceric.13G070600.1 SPT16, Ceric.13G070600 component *(SPT16) of FACT histone chaperone complex &... 0.05 OrthoFinder output from all 47 species
Dcu_g03153 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.07 OrthoFinder output from all 47 species
GSVIVT01031306001 SPT16 Chromatin organisation.histone chaperone activities.FACT... 0.1 OrthoFinder output from all 47 species
LOC_Os12g26030.1 SPT16, LOC_Os12g26030 component SPT16 of FACT histone chaperone complex 0.04 OrthoFinder output from all 47 species
Len_g04839 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
MA_10427450g0010 SPT16 component SPT16 of FACT histone chaperone complex 0.05 OrthoFinder output from all 47 species
MA_10430230g0030 SPT16 component SPT16 of FACT histone chaperone complex 0.08 OrthoFinder output from all 47 species
Mp1g28760.1 SPT16 component SPT16 of FACT histone chaperone complex 0.05 OrthoFinder output from all 47 species
Nbi_g07101 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.05 OrthoFinder output from all 47 species
Ore_g30315 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Ore_g34845 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Ore_g38685 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.04 OrthoFinder output from all 47 species
Ore_g42165 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g03995 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Sam_g16028 No alias component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Smo170207 SPT16 Chromatin organisation.histone chaperone activities.FACT... 0.03 OrthoFinder output from all 47 species
Solyc01g101020.4.1 SPT16, Solyc01g101020 component SPT16 of FACT histone chaperone complex 0.03 OrthoFinder output from all 47 species
Spa_g12849 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.04 OrthoFinder output from all 47 species
Tin_g09326 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e013464_P001 SPT16, Zm00001e013464 component SPT16 of FACT histone chaperone complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Cluster_244GO:0008213
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP group of a lysine residue." [GOC:mah]">GO:0016278 lysine N-methyltransferase activity protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR000994 Pept_M24 197 406
IPR029148 FACT-Spt16_Nlobe 19 181
IPR013719 RTT106/SPT16-like_middle_dom 826 907
IPR013953 FACT_Spt16 543 694
No external refs found!