LOC_Os02g08300.1

Description : shuttle protein (RAD23)

Gene families : OG_01_0001284 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001284_tree ,
OG_02_0001166 (LandPlants) Phylogenetic Tree(s): OG_02_0001166_tree ,
OG_03_0001263 (SeedPlants) Phylogenetic Tree(s): OG_03_0001263_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g08300.1
Cluster	HCCA: Cluster_353

Target	Alias	Description	ECC score	Gene Family Method
AT1G16190	RAD23A	Rad23 UV excision repair protein family	0.02	Archaeplastida
GSVIVT01016076001	No alias	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01031048001	No alias	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana	0.02	Archaeplastida
Pp3c10_8490V3.1	No alias	Rad23 UV excision repair protein family	0.02	Archaeplastida
Solyc02g063130.4.1	No alias	shuttle protein (RAD23)	0.03	Archaeplastida
Zm00001e025088_P005	No alias	shuttle protein (RAD23)	0.07	Archaeplastida
AMTR_s00156p00078120	evm_27.TU.AmTr_v1...	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica	0.02	LandPlants
AT1G16190	RAD23A	Rad23 UV excision repair protein family	0.02	LandPlants
AT1G79650	RAD23B, RAD23	Rad23 UV excision repair protein family	0.02	LandPlants
GSVIVT01016076001	No alias	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.03	LandPlants
GSVIVT01031048001	No alias	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana	0.02	LandPlants
Gb_20110	No alias	shuttle protein (RAD23)	0.02	LandPlants
Pp3c10_8490V3.1	No alias	Rad23 UV excision repair protein family	0.02	LandPlants
Solyc02g063130.4.1	No alias	shuttle protein (RAD23)	0.03	LandPlants
Solyc03g117780.2.1	No alias	shuttle protein (RAD23)	0.02	LandPlants
Zm00001e025088_P005	No alias	shuttle protein (RAD23)	0.06	LandPlants
Zm00001e030951_P001	No alias	shuttle protein (RAD23)	0.02	LandPlants
AMTR_s00156p00078120	evm_27.TU.AmTr_v1...	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica	0.02	SeedPlants
AT1G16190	RAD23A	Rad23 UV excision repair protein family	0.02	SeedPlants
AT1G79650	RAD23B, RAD23	Rad23 UV excision repair protein family	0.02	SeedPlants
GSVIVT01016076001	No alias	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.03	SeedPlants
Solyc02g063130.4.1	No alias	shuttle protein (RAD23)	0.03	SeedPlants
Solyc03g117780.2.1	No alias	shuttle protein (RAD23)	0.02	SeedPlants
Zm00001e025088_P005	No alias	shuttle protein (RAD23)	0.06	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	76
IPR015360	XPC-bd	245	300
IPR015940	UBA	326	362
IPR015940	UBA	147	184

External Links

No external refs found!

LOC_Os02g08300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation