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  5. LOC_Os04g16844.1

LOC_Os04g16844.1 (PETD, LOC_Os04g16844)


Aliases : PETD, LOC_Os04g16844

Description : component PetD/IV of cytochrome b6/f complex


Gene families : OG0008554 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008554_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g16844.1

Target Alias Description ECC score Gene Family Method Actions
ATCG00730 PETD photosynthetic electron transfer D 0.47 OrthoFinder output from all 47 species
Als_g01331 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.12 OrthoFinder output from all 47 species
Cba_g65705 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.09 OrthoFinder output from all 47 species
Ceric.05G041800.1 PETD, Ceric.05G041800 component *(PetD/IV) of cytochrome b6/f complex &... 0.18 OrthoFinder output from all 47 species
Ceric.05G044800.1 PETD, Ceric.05G044800 component *(PetD/IV) of cytochrome b6/f complex &... 0.35 OrthoFinder output from all 47 species
Ceric.13G017000.1 PETD, Ceric.13G017000 component *(PetD/IV) of cytochrome b6/f complex &... 0.04 OrthoFinder output from all 47 species
Ceric.1Z019600.1 PETD, Ceric.1Z019600 component *(PetD/IV) of cytochrome b6/f complex &... 0.18 OrthoFinder output from all 47 species
Ceric.1Z163300.1 PETD, Ceric.1Z163300 not classified & original description: pacid=50596945... 0.1 OrthoFinder output from all 47 species
Ceric.29G003800.1 PETD, Ceric.29G003800 component *(PetD/IV) of cytochrome b6/f complex &... 0.18 OrthoFinder output from all 47 species
Ceric.32G035100.1 PETD, Ceric.32G035100 component *(PetD/IV) of cytochrome b6/f complex &... 0.07 OrthoFinder output from all 47 species
Ceric.38G008500.1 PETD, Ceric.38G008500 component *(PetD/IV) of cytochrome b6/f complex &... 0.18 OrthoFinder output from all 47 species
Dcu_g47307 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.19 OrthoFinder output from all 47 species
Gb_03953 No alias component PetD/IV of cytochrome b6/f complex 0.07 OrthoFinder output from all 47 species
LOC_Os08g15292.1 PETD, LOC_Os08g15292 component PetD/IV of cytochrome b6/f complex 0.1 OrthoFinder output from all 47 species
Mp1g00750.1 No alias Cytochrome b6-f complex subunit 4 OS=Pinus thunbergii... 0.11 OrthoFinder output from all 47 species
Ore_g03954 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.25 OrthoFinder output from all 47 species
Pir_g65515 PETD component *(PetD/IV) of cytochrome b6/f complex &... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002259 PETD not classified & original description: CDS=1-288 0.13 OrthoFinder output from all 47 species
Sam_g10280 No alias component *(PetD/IV) of cytochrome b6/f complex &... 0.16 OrthoFinder output from all 47 species
Solyc00g500028.1.1 PETD, Solyc00g500028 Cytochrome b6-f complex subunit 4 OS=Nymphaea alba... 0.46 OrthoFinder output from all 47 species
Solyc00g500073.1.1 PETB, Solyc00g500073 Cytochrome b6 OS=Helianthus annuus (sp|q1kxs9|cyb6_helan : 261.0) 0.39 OrthoFinder output from all 47 species
Solyc00g500158.1.1 PETD, Solyc00g500158 component PetD/IV of cytochrome b6/f complex 0.46 OrthoFinder output from all 47 species
Solyc01g017430.1.1 PETD, Solyc01g017430 Cytochrome b6-f complex subunit 4 OS=Nymphaea alba... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR005798 Cyt_b/b6_C 44 133
No external refs found!