LOC_Os04g16820.1 (RPOB, LOC_Os04g16820)

Aliases : RPOB, LOC_Os04g16820

Description : RpoB core component plastid-encoded RNA polymerase

Gene families : OG0005891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005891_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g16820.1
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108130	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.04	OrthoFinder output from all 47 species
AMTR_s00145p00090170	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.03	OrthoFinder output from all 47 species
AMTR_s00626p00011520	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Morus indica	0.05	OrthoFinder output from all 47 species
AMTR_s01499p00009870	RPOB,...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.03	OrthoFinder output from all 47 species
ATCG00190	RPOB	RNA polymerase subunit beta	0.06	OrthoFinder output from all 47 species
Aev_g18557	RPOB	core component *(RpoB) of plastid-encoded RNA polymerase...	0.11	OrthoFinder output from all 47 species
Ceric.33G023100.1	RPOB, Ceric.33G023100	not classified & original description: pacid=50607182...	0.09	OrthoFinder output from all 47 species
Ceric.38G009900.1	RPOB, Ceric.38G009900	not classified & original description: pacid=50579505...	0.12	OrthoFinder output from all 47 species
Gb_02251	RPOB	RpoB core component plastid-encoded RNA polymerase	0.04	OrthoFinder output from all 47 species
Gb_06830	RPOB	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.04	OrthoFinder output from all 47 species
Mp1g13170.1	RPOB	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.06	OrthoFinder output from all 47 species
Mp6g01430.1	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Nbi_g14004	RPOB	core component *(RpoB) of plastid-encoded RNA polymerase...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0533.g027472	RPOB	not classified & original description: CDS=1-1728	0.05	OrthoFinder output from all 47 species
Smo236845	RPOB	RNA biosynthesis.organelle machineries.RNA polymerase...	0.02	OrthoFinder output from all 47 species
Smo237022	RPOB	RNA biosynthesis.organelle machineries.RNA polymerase...	0.02	OrthoFinder output from all 47 species
Smo237023	RPOB	RNA biosynthesis.organelle machineries.RNA polymerase...	0.02	OrthoFinder output from all 47 species
Solyc00g500053.1.1	RPOB, Solyc00g500053	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.05	OrthoFinder output from all 47 species
Solyc01g095950.1.1	RPOB, Solyc01g095950	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.05	OrthoFinder output from all 47 species
Solyc02g067590.2.1	RPOB, Solyc02g067590	DNA-directed RNA polymerase subunit beta OS=Liriodendron...	0.05	OrthoFinder output from all 47 species
Solyc08g028750.1.1	Solyc08g028750	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc10g017920.1.1	RPOB, Solyc10g017920	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.06	OrthoFinder output from all 47 species
Solyc12g035870.3.1	RPOB, Solyc12g035870	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007644	RNA_pol_bsu_protrusion	9	348
IPR007645	RNA_pol_Rpb2_3	372	440
IPR007641	RNA_pol_Rpb2_7	978	1053
IPR007642	RNA_pol_Rpb2_2	119	307
IPR007120	DNA-dir_RNAP_su2_dom	580	976

External Links

No external refs found!

LOC_Os04g16820.1 (RPOB, LOC_Os04g16820)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation