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  5. LOC_Os04g12480.1

LOC_Os04g12480.1 (APUM4, PUM4, LOC_Os04g12480)


Aliases : APUM4, PUM4, LOC_Os04g12480

Description : Pumilio homolog 3 OS=Arabidopsis thaliana (sp|q9zw02|pum3_arath : 421.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g12480.1

Target Alias Description ECC score Gene Family Method Actions
AT2G29200 PUM1, APUM1 pumilio 1 0.04 OrthoFinder output from all 47 species
Aev_g07329 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06713 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28239 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0728.g027633 APUM4, PUM4 not classified & original description: CDS=1-1200 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004797 thymidine kinase activity IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 175 206
IPR001313 Pumilio_RNA-bd_rpt 64 94
IPR001313 Pumilio_RNA-bd_rpt 28 60
IPR001313 Pumilio_RNA-bd_rpt 208 237
IPR001313 Pumilio_RNA-bd_rpt 136 163
IPR001313 Pumilio_RNA-bd_rpt 99 126
IPR001313 Pumilio_RNA-bd_rpt 253 274
No external refs found!