1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g06770.2

LOC_Os04g06770.2 (AGO4, OCP11, LOC_Os04g06770)


Aliases : AGO4, OCP11, LOC_Os04g06770

Description : siRNA-integrating factor (AGO)


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g06770.2
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 AGO4, OCP11,... Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
AMTR_s00122p00122810 PNH, AGO10, ZLL,... Chromatin organisation.DNA methylation.canonical... 0.03 OrthoFinder output from all 47 species
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.06 OrthoFinder output from all 47 species
AT2G27040 AGO4, OCP11 Argonaute family protein 0.04 OrthoFinder output from all 47 species
Adi_g088499 AGO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g114845 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18539.t1 PNH, AGO10, ZLL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G078000.1 PNH, AGO10, ZLL,... not classified & original description: pacid=50589285... 0.06 OrthoFinder output from all 47 species
Ceric.28G056900.1 AGO1, Ceric.28G056900 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Ceric.30G040900.1 AGO4, OCP11,... siRNA-integrating factor *(AGO) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.34G039800.1 AGO1, Ceric.34G039800 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Cre16.g689647 AGO1 Protein argonaute 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dac_g05113 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18764 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.04 OrthoFinder output from all 47 species
Ehy_g06133 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
GSVIVT01012529001 AGO7, ZIP Protein argonaute 7 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
GSVIVT01018054001 PNH, AGO10, ZLL Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
GSVIVT01029383001 AGO1 Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.05 OrthoFinder output from all 47 species
Gb_34718 PNH, AGO10, ZLL Protein argonaute 10 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Len_g40869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59218 AGO9 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03429 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Lfl_g05724 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Lfl_g08087 AGO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10427420g0010 AGO1 Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
MA_118377g0010 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.04 OrthoFinder output from all 47 species
Mp1g23190.1 AGO9 siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Msp_g14613 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g11818 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20845 PNH, AGO10, ZLL not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14534 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Sam_g08413 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Sam_g27567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo110151 AGO1 Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Solyc01g008960.3.1 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.05 OrthoFinder output from all 47 species
Solyc03g098280.4.1 AGO1, Solyc03g098280 RIS-Complex miRNA recruiting factor (AGO1) 0.06 OrthoFinder output from all 47 species
Solyc06g072300.4.1 AGO1, Solyc06g072300 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Solyc06g073540.4.1 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Solyc07g049500.3.1 AGO6, Solyc07g049500 siRNA-integrating factor (AGO) 0.06 OrthoFinder output from all 47 species
Solyc09g082830.4.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.04 OrthoFinder output from all 47 species
Spa_g12542 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Spa_g30415 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Spa_g57163 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.01 OrthoFinder output from all 47 species
Zm00001e017367_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.04 OrthoFinder output from all 47 species
Zm00001e025496_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Zm00001e027670_P001 AGO1, Zm00001e027670 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Zm00001e032609_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.06 OrthoFinder output from all 47 species
Zm00001e041452_P004 AGO1, Zm00001e041452 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003165 Piwi 566 872
IPR032474 Argonaute_N 56 217
IPR014811 ArgoL1 229 277
IPR032472 ArgoL2 422 467
IPR003100 PAZ_dom 283 412
IPR032473 Argonaute_Mid_dom 476 557
No external refs found!