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  5. LOC_Os04g04980.1

LOC_Os04g04980.1 (LOC_Os04g04980)


Aliases : LOC_Os04g04980

Description : ornithine decarboxylase


Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g04980.1

Target Alias Description ECC score Gene Family Method Actions
Als_g04281 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03505 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11280 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21795 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36762 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0090.g042654 SAMDC EC_4.1 carbon-carbon lyase & original description: CDS=700-2217 0.1 OrthoFinder output from all 47 species
Cba_g07410 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g35531 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.15G068700.1 Ceric.15G068700 EC_4.1 carbon-carbon lyase & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g19187 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01015446001 No alias Polyamine metabolism.putrescine.synthesis.cytosolic... 0.04 OrthoFinder output from all 47 species
LOC_Os09g37120.1 LOC_Os09g37120 ornithine decarboxylase 0.04 OrthoFinder output from all 47 species
Mp7g18100.1 No alias S-adenosyl methionine decarboxylase 0.04 OrthoFinder output from all 47 species
Msp_g01657 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g09562 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32373 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17644 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08792 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54737 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g098300.1.1 Solyc03g098300 ornithine decarboxylase 0.02 OrthoFinder output from all 47 species
Solyc03g098310.1.1 Solyc03g098310 ornithine decarboxylase 0.04 OrthoFinder output from all 47 species
Tin_g00861 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13449 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e022950_P001 Zm00001e022950 S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
InterPro domains Description Start Stop
IPR022643 De-COase2_C 180 275
IPR022644 De-COase2_N 58 169
No external refs found!