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  5. LOC_Os04g02820.1

LOC_Os04g02820.1 (LOS1, LOC_Os04g02820)


Aliases : LOS1, LOC_Os04g02820

Description : mRNA-translocation factor (eEF2)


Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os04g02820.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00133570 LOS1,... Protein biosynthesis.translation elongation.eEF2... 0.05 OrthoFinder output from all 47 species
AT1G56070 LOS1 Ribosomal protein S5/Elongation factor G/III/V family protein 0.05 OrthoFinder output from all 47 species
Ceric.25G007600.1 LOS1, Ceric.25G007600 mRNA-translocation factor *(eEF2)) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.39 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.02 OrthoFinder output from all 47 species
Cre12.g516200 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.03 OrthoFinder output from all 47 species
GSVIVT01020404001 LOS1 Elongation factor 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_02896 LOS1 mRNA-translocation factor (eEF2) 0.02 OrthoFinder output from all 47 species
Lfl_g06654 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10426758g0020 LOS1 Elongation factor 2 OS=Beta vulgaris... 0.03 OrthoFinder output from all 47 species
Mp2g20190.1 LOS1 mRNA-translocation factor (eEF2) 0.03 OrthoFinder output from all 47 species
Mp2g20200.1 LOS1 mRNA-translocation factor (eEF2) 0.03 OrthoFinder output from all 47 species
Sam_g38282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g49446 No alias mRNA-translocation factor *(eEF2)) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc08g062910.4.1 LOS1, Solyc08g062910 mRNA-translocation factor (eEF2) 0.06 OrthoFinder output from all 47 species
Solyc08g062920.3.1 LOS1, Solyc08g062920 mRNA-translocation factor (eEF2) 0.04 OrthoFinder output from all 47 species
Spa_g06406 LOS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006293_P001 LOS1, Zm00001e006293 mRNA-translocation factor (eEF2) 0.06 OrthoFinder output from all 47 species
Zm00001e006294_P001 LOS1, Zm00001e006294 mRNA-translocation factor (eEF2) 0.06 OrthoFinder output from all 47 species
Zm00001e029078_P002 LOS1, Zm00001e029078 mRNA-translocation factor (eEF2) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000640 EFG_V-like 724 811
IPR004161 EFTu-like_2 394 467
IPR041095 EFG_II 487 549
IPR000795 T_Tr_GTP-bd_dom 18 342
IPR005517 Transl_elong_EFG/EF2_IV 611 722
No external refs found!