LOC_Os04g01970.1 (CHB3, ATSWI3D, LOC_Os04g01970)


Aliases : CHB3, ATSWI3D, LOC_Os04g01970

Description : component BAF255/170 of chromatin remodeling complex


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g01970.1

Target Alias Description ECC score Gene Family Method Actions
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.02 OrthoFinder output from all 47 species
Aev_g28890 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Aob_g16327 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Aspi01Gene17691.t1 Aspi01Gene17691 SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.52 CHB4, SWI3C, ATSWI3C Chromatin organisation.chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Dcu_g03107 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Dcu_g15056 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
MA_10426836g0010 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Mp8g15610.1 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Pir_g47159 CHB2, SWI3B, ATSWI3B SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Solyc04g082760.3.1 CHB2, SWI3B,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032451 SMARCC_C 780 856
IPR001005 SANT/Myb 333 375
IPR007526 SWIRM 110 195
No external refs found!