LOC_Os03g63560.1 (LOC_Os03g63560)


Aliases : LOC_Os03g63560

Description : OTP70 plastidial RNA splicing factor


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g63560.1

Target Alias Description ECC score Gene Family Method Actions
AT1G08070 OTP82 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G39350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g002819 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015033 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07982 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23888 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g44680 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g08067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24403 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24711 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30592 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30892 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31182 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05672 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06261 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06415 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07384 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g07454 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g11556 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19136 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07361 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g15693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16170 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16783 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29893 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene10220.t1 OTP84, Aspi01Gene10220 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene12870.t1 Aspi01Gene12870 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene13883.t1 Aspi01Gene13883 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30841.t1 OTP82, Aspi01Gene30841 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene33092.t1 Aspi01Gene33092 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene35047.t1 Aspi01Gene35047 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene41775.t2 Aspi01Gene41775 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66046.t1 Aspi01Gene66046 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66061.t2 Aspi01Gene66061 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g04626 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g04693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19909 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75337 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G011400.1 Ceric.03G011400 not classified & original description: pacid=50571389... 0.03 OrthoFinder output from all 47 species
Ceric.07G061800.1 Ceric.07G061800 not classified & original description: pacid=50627604... 0.09 OrthoFinder output from all 47 species
Ceric.29G081800.1 VAC1, ECB2,... not classified & original description: pacid=50624309... 0.02 OrthoFinder output from all 47 species
Dac_g35668 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43191 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26238 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21521 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g25114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26464 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g47807 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g24574 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os02g46980.1 LOC_Os02g46980 Pentatricopeptide repeat-containing protein At1g31920... 0.01 OrthoFinder output from all 47 species
LOC_Os03g32620.1 LOC_Os03g32620 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os03g60200.1 LOC_Os03g60200 Pentatricopeptide repeat-containing protein At2g41080... 0.01 OrthoFinder output from all 47 species
LOC_Os04g35610.1 LOC_Os04g35610 RNA editing factor (SLO2) 0.04 OrthoFinder output from all 47 species
LOC_Os06g29800.1 LOC_Os06g29800 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
LOC_Os08g05750.1 LOC_Os08g05750 Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.08 OrthoFinder output from all 47 species
Len_g03880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07804 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12681 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g15216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26678 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g28060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36699 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g18730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31366 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g06660 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16043 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30748 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03089 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60415 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g63846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04620 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07557 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g56908 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g59316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001819 OTP86 not classified & original description: CDS=1-3381 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008151 No alias component *(uL29) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013956 No alias not classified & original description: CDS=1-2181 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015411 No alias not classified & original description: CDS=1-3726 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019397 No alias not classified & original description: CDS=1-2220 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025550 No alias not classified & original description: CDS=1-2784 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025598 No alias not classified & original description: CDS=1-3840 0.02 OrthoFinder output from all 47 species
Sam_g03180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g44584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09151 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10948 MEF22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26895 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g28700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44074 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 437
IPR002885 Pentatricopeptide_repeat 199 238
IPR002885 Pentatricopeptide_repeat 243 286
IPR002885 Pentatricopeptide_repeat 141 188
No external refs found!