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  5. LOC_Os03g62780.1

LOC_Os03g62780.1 (LOC_Os03g62780)


Aliases : LOC_Os03g62780

Description : no hits & (original description: none)


Gene families : OG0006499 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006499_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g62780.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00012640 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.07 OrthoFinder output from all 47 species
AT3G23700 No alias Nucleic acid-binding proteins superfamily 0.05 OrthoFinder output from all 47 species
Adi_g001996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03265 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04569 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g08286 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g01702 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g27368 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Aspi01Gene14361.t1 Aspi01Gene14361 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Azfi_s0534.g076070 No alias not classified & original description: CDS=250-1461 0.06 OrthoFinder output from all 47 species
Cba_g16549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.11G080900.1 Ceric.11G080900 not classified & original description: pacid=50596374... 0.07 OrthoFinder output from all 47 species
Cre03.g148950 No alias 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g02753 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g03799 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g07957 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g01039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031632001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.08 OrthoFinder output from all 47 species
Gb_13624 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.1 OrthoFinder output from all 47 species
Len_g12635 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Lfl_g01511 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_37826g0010 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Mp6g19820.1 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.05 OrthoFinder output from all 47 species
Msp_g04843 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g02820 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26841 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g40824 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g12492 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pnu_g01274 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g05108 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023855 No alias not classified & original description: CDS=194-1321 0.03 OrthoFinder output from all 47 species
Sam_g30081 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Smo96268 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.06 OrthoFinder output from all 47 species
Spa_g11144 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Tin_g18988 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g23785 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Zm00001e006347_P003 Zm00001e006347 no hits & (original description: none) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 178 254
IPR003029 S1_domain 91 164
No external refs found!