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  5. LOC_Os03g62510.1

LOC_Os03g62510.1 (LOC_Os03g62510)


Aliases : LOC_Os03g62510

Description : Prolycopene isomerase, chloroplastic OS=Daucus carota (sp|q2vex9|crtso_dauca : 194.0)


Gene families : OG0002889 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002889_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g62510.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00187330 evm_27.TU.AmTr_v1... Prolycopene isomerase, chloroplastic OS=Daucus carota 0.06 OrthoFinder output from all 47 species
AT1G57770 No alias FAD/NAD(P)-binding oxidoreductase family protein 0.03 OrthoFinder output from all 47 species
Adi_g052232 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g49491 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g06469 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33225 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene67252.t1 Aspi01Gene67252 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08553 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g27219 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ceric.23G052400.1 Ceric.23G052400 not classified & original description: pacid=50610225... 0.05 OrthoFinder output from all 47 species
Ceric.32G057300.1 Ceric.32G057300 not classified & original description: pacid=50597506... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001258.10 No alias No description available 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.8 No alias No description available 0.05 OrthoFinder output from all 47 species
Cre09.g407200 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.04 OrthoFinder output from all 47 species
Cre16.g674950 No alias Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum 0.01 OrthoFinder output from all 47 species
Dac_g23383 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g10069 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g14193 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g06829 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g23170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023233001 No alias Prolycopene isomerase, chloroplastic OS=Daucus carota 0.04 OrthoFinder output from all 47 species
Gb_39487 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_10428345g0020 No alias Prolycopene isomerase, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_10428660g0010 No alias Prolycopene isomerase 1, chloroplastic OS=Oncidium... 0.06 OrthoFinder output from all 47 species
Msp_g48604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08605 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10834 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014061 No alias not classified & original description: CDS=115-1746 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021866 No alias not classified & original description: CDS=168-1886 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0204.g025671 No alias not classified & original description: CDS=41-1720 0.02 OrthoFinder output from all 47 species
Smo229587 No alias Prolycopene isomerase 1, chloroplastic OS=Oncidium... 0.06 OrthoFinder output from all 47 species
Solyc05g010180.4.1 Solyc05g010180 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.02 OrthoFinder output from all 47 species
Spa_g07332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10638 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g23774 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e011669_P002 Zm00001e011669 Prolycopene isomerase, chloroplastic OS=Daucus carota... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004807 triose-phosphate isomerase activity IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 85 581
No external refs found!