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  5. LOC_Os03g62230.1

LOC_Os03g62230.1 (STOP1, LOC_Os03g62230)


Aliases : STOP1, LOC_Os03g62230

Description : C2H2 zinc finger transcription factor


Gene families : OG0002003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g62230.1

Target Alias Description ECC score Gene Family Method Actions
AT5G22890 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g021450 STOP1 C2H2-type subclass STOP transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g08694 STOP1 C2H2-type subclass STOP transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G011000.1 STOP1, Ceric.06G011000 C2H2-type subclass STOP transcription factor & original... 0.05 OrthoFinder output from all 47 species
Dcu_g16795 STOP1 C2H2-type subclass STOP transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01031459001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 OrthoFinder output from all 47 species
GSVIVT01034505001 STOP1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 OrthoFinder output from all 47 species
LOC_Os08g44830.1 LOC_Os08g44830 C2H2 zinc finger transcription factor 0.08 OrthoFinder output from all 47 species
Len_g11266 STOP1 C2H2-type subclass STOP transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g11084 STOP1 C2H2-type subclass STOP transcription factor & original... 0.07 OrthoFinder output from all 47 species
Smo58353 STOP1 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
Solyc11g017140.3.1 STOP1, Solyc11g017140 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e006302_P001 STOP1, Zm00001e006302 C2H2 zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e039485_P001 STOP1, Zm00001e039485 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 165 186
No external refs found!