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  5. LOC_Os03g61260.1

LOC_Os03g61260.1 (LOC_Os03g61260)


Aliases : LOC_Os03g61260

Description : component psRPL18 of large ribosomal subunit proteome


Gene families : OG0005910 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005910_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g61260.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00209880 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
AT1G48350 No alias Ribosomal L18p/L5e family protein 0.23 OrthoFinder output from all 47 species
Adi_g001890 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aev_g28610 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g00228 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aob_g03843 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g20657 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cba_g10879 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.13G022200.1 Ceric.13G022200 component *(uL18c) of large plastid ribosomal-subunit... 0.23 OrthoFinder output from all 47 species
Cre01.g052100 No alias Protein biosynthesis.organelle translation... 0.16 OrthoFinder output from all 47 species
Dac_g05557 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Dcu_g31625 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dde_g24129 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g02012 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01017720001 No alias Protein biosynthesis.organelle translation... 0.13 OrthoFinder output from all 47 species
Gb_12756 No alias component psRPL18 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Len_g30980 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Lfl_g00332 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
MA_7609850g0010 No alias 50S ribosomal protein L18, chloroplastic OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Mp6g08500.1 No alias component psRPL18 of large ribosomal subunit proteome 0.25 OrthoFinder output from all 47 species
Msp_g22178 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g15098 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g07264 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ore_g07265 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ppi_g02809 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017759 No alias EC_3.2 glycosylase & original description: CDS=437-952 0.03 OrthoFinder output from all 47 species
Sam_g19670 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g45370 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Smo143891 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Solyc12g098890.2.1 Solyc12g098890 component psRPL18 of large ribosomal subunit proteome 0.24 OrthoFinder output from all 47 species
Spa_g00581 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Tin_g00498 No alias component *(uL18c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e006246_P001 Zm00001e006246 component psRPL18 of large ribosomal subunit proteome 0.29 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005484 Ribosomal_L18 54 170
No external refs found!