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Aliases : LOC_Os03g60930
Description : pre-60S ribosomal subunit assembly factor (NOP4)
Gene families : OG0005318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005318_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G21440 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g050354 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g33867 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g14659 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s1017.g095259 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g11828 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.10G020200.1 | Ceric.10G020200 | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g16260 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g03991 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_24677 | No alias | pre-60S ribosomal subunit assembly factor (NOP4) | 0.03 | OrthoFinder output from all 47 species | |
| MA_10433709g0020 | No alias | pre-60S ribosomal subunit assembly factor (NOP4) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13408 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g43889 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g36856 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g18515 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g32963 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g08068 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo419047 | No alias | No description available | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g08758 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g27533 | No alias | pre-60S ribosomal subunit assembly factor *(NOP4) &... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e011846_P001 | Zm00001e011846 | pre-60S ribosomal subunit assembly factor (NOP4) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
| MF | GO:0008276 | protein methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | HCCA |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0017069 | snRNA binding | IEP | HCCA |
| MF | GO:0017070 | U6 snRNA binding | IEP | HCCA |
| MF | GO:0018024 | histone lysine N-methyltransferase activity | IEP | HCCA |
| MF | GO:0030623 | U5 snRNA binding | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| MF | GO:0042054 | histone methyltransferase activity | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| No external refs found! |