LOC_Os03g60870.1 (RABA2b, ATRAB-A2B,...)


Aliases : RABA2b, ATRAB-A2B, ATRABA2B, RAB-A2B, LOC_Os03g60870

Description : A-class RAB GTPase


Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60870.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00189630 AtRABA1f,... Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
AT1G06400 ATRABA1A, ARA2,... Ras-related small GTP-binding family protein 0.02 OrthoFinder output from all 47 species
AT2G43130 ATRABA5C, ARA4,... P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
AT4G18800 ATHSGBP, RABA1d,... RAB GTPase homolog A1D 0.02 OrthoFinder output from all 47 species
Adi_g001047 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049633 ATRABA2A,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078037 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078038 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene00456.t1 AtRABA1f,... A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010022 AtRABA1f, RABA1f A-class RAB GTPase & original description: CDS=217-867 0.03 OrthoFinder output from all 47 species
Cba_g09606 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Cre03.g189250 ATRABA2A,... Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Dac_g01462 ATRABA2A,... A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08021 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023225001 ATRABA2A,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
MA_10434967g0010 AtRABA1f, RABA1f A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Msp_g02354 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15644 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20309 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c2_10280V3.1 RABA2b,... RAB GTPase homolog A2B 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011299 AtRABA1f, RABA1f A-class RAB GTPase & original description: CDS=186-836 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021862 AtRABA1f, RABA1f A-class RAB GTPase & original description: CDS=191-841 0.05 OrthoFinder output from all 47 species
Sam_g17397 No alias A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g098170.4.1 AtRABA5d,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Solyc10g045550.2.1 ATRABA2A,... A-class RAB GTPase 0.05 OrthoFinder output from all 47 species
Solyc12g014080.2.1 AtRABA1f,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Spa_g42041 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56612 AtRABA1f, RABA1f A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011737_P001 RABA2b,... A-class RAB GTPase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0016020 membrane IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 174
No external refs found!