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  5. LOC_Os03g60530.1

LOC_Os03g60530.1 (ATRABE1C, ATRAB8A,...)


Aliases : ATRABE1C, ATRAB8A, ARA-3, RAB8A, ARA3, LOC_Os03g60530

Description : E-class RAB GTPase


Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60530.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00168p00058210 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Adi_g004291 ATRABE1D,... E-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g020689 ATRABE1D,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020690 ATRABE1C,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100850 ATRABE1C,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117529 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38493 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03105 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0125.g048540 ATRABE1C,... E-class RAB GTPase & original description: CDS=167-790 0.02 OrthoFinder output from all 47 species
Cba_g07305 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14771 ATRABE1C,... E-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Cre15.g641800 ATRABE1D,... GTP-binding protein yptV2 OS=Volvox carteri 0.05 OrthoFinder output from all 47 species
Dcu_g37268 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09631 No alias E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016596001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.06 OrthoFinder output from all 47 species
Gb_13978 ATRABE1C,... E-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Gb_23645 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Len_g01702 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16013 ATRABE1D,... E-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Mp4g20100.1 ATRABE1C,... E-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Msp_g05932 ATRABE1D,... E-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25496 ATRABE1D,... E-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c25_7430V3.1 ATRABE1C,... RAB GTPase homolog 8A 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000647 ATRABE1D,... not classified & original description: CDS=1-615 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010582 ATRABE1C,... not classified & original description: CDS=1-537 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011564 ATRABE1C,... not classified & original description: CDS=148-741 0.02 OrthoFinder output from all 47 species
Sam_g39848 No alias E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Smo437530 ATRABE1C,... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Solyc04g011360.3.1 ATRABE1C,... E-class RAB GTPase 0.05 OrthoFinder output from all 47 species
Spa_g07929 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04389 ATRABE1D,... E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006180_P001 ATRABE1C,... E-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Zm00001e033170_P001 ATRABE1C,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030173 obsolete integral component of Golgi membrane IEP HCCA
BP GO:0031023 microtubule organizing center organization IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 17 178
No external refs found!