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  5. LOC_Os03g59710.1

LOC_Os03g59710.1 (LOC_Os03g59710)


Aliases : LOC_Os03g59710

Description : component SF3B6 of splicing factor 3B complex


Gene families : OG0004199 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004199_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g59710.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
MA_8503g0010 No alias component SF3B6 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Mp2g24730.1 No alias component SF3B6 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species
Msp_g11476 No alias component *(SF3B6) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Pp3c1_15740V3.1 Pp3c1_15740 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Ppi_g00208 No alias component *(SF3B6) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 21 87
No external refs found!