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  5. LOC_Os03g59120.1

LOC_Os03g59120.1 (TIC55-IV, ACD1-LIKE,...)


Aliases : TIC55-IV, ACD1-LIKE, PTC52, LOC_Os03g59120

Description : Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana (sp|q8w496|ptc52_arath : 412.0)


Gene families : OG0000770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g59120.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00127460 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.03 OrthoFinder output from all 47 species
AMTR_s00140p00073520 evm_27.TU.AmTr_v1... Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00140p00074640 ACD1, PAO, LLS1,... Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll... 0.05 OrthoFinder output from all 47 species
AT4G25650 TIC55-IV,... ACD1-like 0.05 OrthoFinder output from all 47 species
Adi_g118091 TIC55-IV,... not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g11672 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21560 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g11225 TIC55-IV,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g20018 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08348 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07297 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08640 TIC55-IV,... not classified & original description: none 0.09 OrthoFinder output from all 47 species
Azfi_s0065.g035849 TIC55-IV,... not classified & original description: CDS=67-1659 0.02 OrthoFinder output from all 47 species
Cba_g07945 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.23G050300.1 TIC55-IV,... not classified & original description: pacid=50610352... 0.05 OrthoFinder output from all 47 species
Ceric.27G047600.1 ACD1, PAO, LLS1,... pheophorbide a oxygenase *(PAO) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000681.17 TIC55-II Protein TIC 55, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre10.g450550 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g05098 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15141 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23486 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g40218 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06903 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07674 TIC55-IV,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g09870 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09899 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01025446001 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.07 OrthoFinder output from all 47 species
Gb_36694 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.07 OrthoFinder output from all 47 species
Gb_37383 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_37385 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g11494 ACD1, PAO, LLS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g21609 TIC55-IV,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g25344 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06032 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g25027 TIC55-IV,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g32038 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g34768 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436082g0010 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.03 OrthoFinder output from all 47 species
MA_12148g0010 ACD1, PAO, LLS1 Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp6g13750.1 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.05 OrthoFinder output from all 47 species
Msp_g12653 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05752 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04262 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42852 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07178 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08953 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09573 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g62298 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pnu_g07246 TIC55-IV,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016507 TIC55-IV,... not classified & original description: CDS=60-1520 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020460 TIC55-IV,... not classified & original description: CDS=394-819 0.03 OrthoFinder output from all 47 species
Sam_g08752 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18566 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g040160.4.1 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.06 OrthoFinder output from all 47 species
Solyc11g066440.2.1 ACD1, PAO, LLS1,... pheophorbide a oxygenase (PAO) 0.02 OrthoFinder output from all 47 species
Spa_g15132 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15427 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g19190 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19191 TIC55-IV,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01976 ACD1, PAO, LLS1 pheophorbide a oxygenase *(PAO) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08240 TIC55-IV,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08591 TIC55-IV,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e006067_P001 TIC55-IV,... Protochlorophyllide-dependent translocon component 52,... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEA Interproscan
MF GO:0051537 2 iron, 2 sulfur cluster binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013626 PaO 306 382
IPR017941 Rieske_2Fe-2S 83 167
No external refs found!