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LOC_Os03g58810.1 (LOC_Os03g58810)


Aliases : LOC_Os03g58810

Description : DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica (sp|q84t03|rh27_orysj : 1005.0)


Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g58810.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00225030 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
AT3G18600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.17 OrthoFinder output from all 47 species
Adi_g023167 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Aev_g03252 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Azfi_s0285.g063130 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Ceric.02G070800.1 Ceric.02G070800 regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.04 OrthoFinder output from all 47 species
Cre07.g314900 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.18 OrthoFinder output from all 47 species
Dac_g23641 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.03 OrthoFinder output from all 47 species
GSVIVT01008218001 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.14 OrthoFinder output from all 47 species
Lfl_g27281 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
MA_109969g0010 No alias DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Mp7g12890.1 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.15 OrthoFinder output from all 47 species
Ore_g04508 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Smo104808 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Smo230685 No alias DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Spa_g08369 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... 0.02 OrthoFinder output from all 47 species
Zm00001e011842_P001 Zm00001e011842 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 120 290
IPR001650 Helicase_C 336 442
IPR025313 DUF4217 485 544
No external refs found!