LOC_Os03g56110.1 (BP, BP1, KNAT1, LOC_Os03g56110)

Aliases : BP, BP1, KNAT1, LOC_Os03g56110

Description : transcription factor (KNOX)

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g56110.1

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene05494.t1	KNAT4, Aspi01Gene05494	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene49532.t1	BP, BP1, KNAT1,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g54312	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g23862	KNAT4	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009273001	BP, BP1, KNAT1	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
GSVIVT01019880001	KNAT7, IXR11	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020608	KNAT5	KNOX-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Solyc08g080120.3.1	KNAT7, IXR11,...	transcription factor (KNOX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	207	225
IPR008422	Homeobox_KN_domain	247	286
IPR005541	KNOX2	143	186
IPR005540	KNOX1	82	121

External Links

No external refs found!

LOC_Os03g56110.1 (BP, BP1, KNAT1, LOC_Os03g56110)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation