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  5. LOC_Os03g55340.1

LOC_Os03g55340.1 (LOC_Os03g55340)


Aliases : LOC_Os03g55340

Description : Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana (sp|q9fvx2|pp129_arath : 599.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g55340.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.02 OrthoFinder output from all 47 species
AMTR_s00147p00069920 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g012989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g01494 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g06010 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.02 OrthoFinder output from all 47 species
Aob_g15608 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27701.t1 EMB2261, Aspi01Gene27701 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31662.t1 Aspi01Gene31662 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene32543.t1 Aspi01Gene32543 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64236.t1 Aspi01Gene64236 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0076.g037813 No alias not classified & original description: CDS=1-1092 0.02 OrthoFinder output from all 47 species
Cba_g02658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.02 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01694 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08151 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10522 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.01 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.01 OrthoFinder output from all 47 species
GSVIVT01026360001 No alias Pentatricopeptide repeat-containing protein At5g18390,... 0.02 OrthoFinder output from all 47 species
GSVIVT01026463001 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.02 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.01 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.02 OrthoFinder output from all 47 species
Lfl_g10212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.01 OrthoFinder output from all 47 species
Msp_g07149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g27162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007283 No alias not classified & original description: CDS=1-1626 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014467 No alias not classified & original description: CDS=1-2058 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s2112.g028265 No alias not classified & original description: CDS=1-1269 0.03 OrthoFinder output from all 47 species
Solyc01g097130.4.1 Solyc01g097130 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
Tin_g10641 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 166
IPR002885 Pentatricopeptide_repeat 276 305
IPR002885 Pentatricopeptide_repeat 234 266
IPR002885 Pentatricopeptide_repeat 168 213
IPR002885 Pentatricopeptide_repeat 376 425
IPR002885 Pentatricopeptide_repeat 307 354
No external refs found!