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  5. LOC_Os03g55100.1

LOC_Os03g55100.1 (DND1, ATCNGC2, CNGC2,...)


Aliases : DND1, ATCNGC2, CNGC2, LOC_Os03g55100

Description : cyclic nucleotide-gated cation channel (CNGC). temperature sensor protein (CNGC2)


Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g55100.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g085040 DND1, ATCNGC2, CNGC2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g090202 DND2, CNGC4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05813 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ala_g27810 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Aob_g32862 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15680.t1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene46957.t1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Gb_31623 CNGC5, ATCNGC5 cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Len_g21708 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Len_g39137 DND2, CNGC4,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_212367g0010 ATCNGC20, CNGC20, CNBT1 Putative cyclic nucleotide-gated ion channel 19... 0.03 OrthoFinder output from all 47 species
Pir_g33867 ATCNGC10, CNGC10, ACBK1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c15_7250V3.1 DND1, ATCNGC2,... cyclic nucleotide-gated cation channel 4 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004661 CNGC7, ATCNGC7 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Solyc03g098210.4.1 ATCNGC20,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Solyc05g050350.2.1 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Tin_g01151 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Zm00001e032059_P001 DND2, CNGC4,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEA Interproscan
BP GO:0006811 monoatomic ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 128 451
IPR000595 cNMP-bd_dom 553 644
No external refs found!