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  5. LOC_Os03g54920.1

LOC_Os03g54920.1 (LOC_Os03g54920)


Aliases : LOC_Os03g54920

Description : no hits & (original description: none)


Gene families : OG0005346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g54920.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cba_g01804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g01757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012014_P001 Zm00001e012014 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR018781 TPRA1/CAND2/CAND8 43 296
No external refs found!