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  5. LOC_Os02g06370.1

LOC_Os02g06370.1


Description : recombination mediator (Whirly). Whirly-type plastidial RNA splicing factor


Gene families : OG_01_0004189 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004189_tree ,
OG_02_0003415 (LandPlants) Phylogenetic Tree(s): OG_02_0003415_tree ,
OG_03_0012154 (SeedPlants) Phylogenetic Tree(s): OG_03_0012154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g06370.1
Cluster HCCA: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
AT1G71260 WHY2, ATWHY2 WHIRLY 2 0.04 Archaeplastida
MA_89233g0010 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.05 Archaeplastida
Smo84708 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Solyc11g044750.3.1 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.09 Archaeplastida
Zm00001e025194_P001 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.06 Archaeplastida
AT1G71260 WHY2, ATWHY2 WHIRLY 2 0.04 LandPlants
AT2G02740 WHY3, PTAC11, ATWHY3 ssDNA-binding transcriptional regulator 0.02 LandPlants
GSVIVT01020061001 No alias RNA processing.organelle machineries.RNA... 0.02 LandPlants
MA_709537g0010 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.02 LandPlants
MA_89233g0010 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.03 LandPlants
Mp3g01640.1 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.01 LandPlants
Smo84708 No alias RNA processing.organelle machineries.RNA... 0.02 LandPlants
Solyc11g044750.3.1 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.08 LandPlants
Zm00001e025194_P001 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.05 LandPlants
AT1G71260 WHY2, ATWHY2 WHIRLY 2 0.04 SeedPlants
Solyc11g044750.3.1 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.08 SeedPlants
Zm00001e025194_P001 No alias recombination mediator (Whirly). Whirly-type plastidial... 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0006952 defense response IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013742 Whirly 52 186
No external refs found!