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  5. LOC_Os03g53630.1

LOC_Os03g53630.1 (LOC_Os03g53630)


Aliases : LOC_Os03g53630

Description : PHD finger transcription factor


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g53630.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G05380 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.08 OrthoFinder output from all 47 species
AT4G14920 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.11 OrthoFinder output from all 47 species
Adi_g001198 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13062 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17243 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16245 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g31776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G070400.1 Ceric.19G070400 not classified & original description: pacid=50576012... 0.02 OrthoFinder output from all 47 species
Ceric.35G031200.1 Ceric.35G031200 not classified & original description: pacid=50581090... 0.02 OrthoFinder output from all 47 species
Cre08.g386000 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
Gb_06644 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.04 OrthoFinder output from all 47 species
Len_g12071 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17560 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g47387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02467 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 OrthoFinder output from all 47 species
Nbi_g07082 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.04 OrthoFinder output from all 47 species
Ore_g28861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.04 OrthoFinder output from all 47 species
Sam_g15944 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g005170.3.1 Solyc03g005170 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc06g082040.2.1 Solyc06g082040 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Solyc09g031580.3.1 Solyc09g031580 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc09g065340.3.1 Solyc09g065340 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g50990 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g12931 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e012046_P003 Zm00001e012046 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032308 TDBD 846 918
No external refs found!