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  5. LOC_Os03g53490.1

LOC_Os03g53490.1 (LOC_Os03g53490)


Aliases : LOC_Os03g53490

Description : Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana (sp|q9luj4|pp248_arath : 422.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g53490.1
Cluster HCCA: Cluster_498

Target Alias Description ECC score Gene Family Method Actions
Aev_g01020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21200 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31661.t1 Aspi01Gene31661 group-II intron mitochondrial splicing factor *(MISF68)... 0.14 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
Lfl_g06036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430437g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Msp_g00645 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g081950.4.1 Solyc04g081950 Pentatricopeptide repeat-containing protein At1g20300,... 0.02 OrthoFinder output from all 47 species
Spa_g15202 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 239 263
IPR033443 PPR_long 356 521
IPR002885 Pentatricopeptide_repeat 266 297
IPR002885 Pentatricopeptide_repeat 303 351
No external refs found!