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  5. LOC_Os03g53270.1

LOC_Os03g53270.1 (LOC_Os03g53270)


Aliases : LOC_Os03g53270

Description : Stem-specific protein TSJT1 OS=Nicotiana tabacum (sp|p24805|tsjt1_tobac : 114.0)


Gene families : OG0000573 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000573_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g53270.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g054485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre16.g680700 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g23716 ATAILP1, AILP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014386001 No alias Stem-specific protein TSJT1 OS=Nicotiana tabacum 0.03 OrthoFinder output from all 47 species
MA_12061g0010 No alias Stem-specific protein TSJT1 OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Ore_g00615 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g11325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo270173 No alias Stem-specific protein TSJT1 OS=Nicotiana tabacum 0.04 OrthoFinder output from all 47 species
Zm00001e005643_P001 Zm00001e005643 Stem-specific protein TSJT1 OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Zm00001e005983_P004 Zm00001e005983 Stem-specific protein TSJT1 OS=Nicotiana tabacum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024286 DUF3700 2 228
No external refs found!