LOC_Os03g52870.1 (LOC_Os03g52870)


Aliases : LOC_Os03g52870

Description : Protein JINGUBANG OS=Arabidopsis thaliana (sp|o48716|jgb_arath : 450.0)


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52870.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00059p00197160 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT2G26490 No alias Transducin/WD40 repeat-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G18950 No alias Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G50390 No alias Transducin/WD40 repeat-like superfamily protein 0.11 OrthoFinder output from all 47 species
AT3G51930 No alias Transducin/WD40 repeat-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G50120 No alias Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g023030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g042459 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g22068 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47008 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17739 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05743.t1 Aspi01Gene05743 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23387.t1 Aspi01Gene23387 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23389.t1 Aspi01Gene23389 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23389.t2 Aspi01Gene23389 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30194.t1 Aspi01Gene30194 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30197.t1 Aspi01Gene30197 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36632.t1 Aspi01Gene36632 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38685.t1 Aspi01Gene38685 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45302.t1 Aspi01Gene45302 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene68894.t1 Aspi01Gene68894 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010472 No alias not classified & original description: CDS=1-1746 0.02 OrthoFinder output from all 47 species
Azfi_s3305.g115285 No alias not classified & original description: CDS=1-1707 0.02 OrthoFinder output from all 47 species
Ceric.12G075900.1 Ceric.12G075900 not classified & original description: pacid=50601390... 0.04 OrthoFinder output from all 47 species
Ceric.15G069400.1 Ceric.15G069400 not classified & original description: pacid=50639526... 0.02 OrthoFinder output from all 47 species
Ceric.28G012600.1 Ceric.28G012600 not classified & original description: pacid=50570711... 0.05 OrthoFinder output from all 47 species
Dac_g11331 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g26745 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g35395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g40515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009612001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_14478 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_26403 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_33498 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g36542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_370291g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp7g17880.1 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g25877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g42608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25659 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0113.g020851 No alias not classified & original description: CDS=1-1557 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0223.g026269 No alias not classified & original description: CDS=1-1944 0.02 OrthoFinder output from all 47 species
Smo66275 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g068250.2.1 Solyc01g068250 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc02g090150.1.1 Solyc02g090150 Protein JINGUBANG OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
Solyc03g111780.1.1 Solyc03g111780 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g005020.3.1 Solyc04g005020 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc05g006340.3.1 Solyc05g006340 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc07g025140.4.1 Solyc07g025140 Protein JINGUBANG OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Solyc12g088980.2.1 Solyc12g088980 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g13772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005608_P001 Zm00001e005608 Protein JINGUBANG OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Zm00001e041085_P001 Zm00001e041085 Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 225 254
IPR001680 WD40_repeat 260 296
IPR001680 WD40_repeat 392 450
IPR001680 WD40_repeat 353 384
No external refs found!