LOC_Os03g52594.4 (LOC_Os03g52594)

Aliases : LOC_Os03g52594

Description : component NOT2 of mRNA deadenylation CCR4-NOT complex

Gene families : OG0002132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002132_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g52594.4
Cluster	HCCA: Cluster_153

Target	Alias	Description	ECC score	Gene Family Method
Adi_g015721	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Aev_g29417	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Aspi01Gene38795.t1	Aspi01Gene38795	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g77312	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Cre06.g309050	No alias	RNA processing.RNA decay.deadenylation-dependent...	0.01	OrthoFinder output from all 47 species
Dde_g01636	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
MA_19243g0010	VIP2, AtVIP2	component NOT2 of mRNA deadenylation CCR4-NOT complex	0.03	OrthoFinder output from all 47 species
Pnu_g20979	No alias	component *(NOT2) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003896	DNA primase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0016872	intramolecular lyase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007282	NOT2/3/5_C	484	596

External Links

No external refs found!

LOC_Os03g52594.4 (LOC_Os03g52594)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation