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  5. LOC_Os03g52490.1

LOC_Os03g52490.1 (LOC_Os03g52490)


Aliases : LOC_Os03g52490

Description : component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase P complex


Gene families : OG0000714 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000714_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g52490.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
Ala_g32341 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Aop_g14670 No alias component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent... 0.02 OrthoFinder output from all 47 species
Ceric.32G009600.1 Ceric.32G009600 not classified & original description: pacid=50597331... 0.03 OrthoFinder output from all 47 species
Cre09.g409500 No alias RNA processing.ribonuclease activities.RNase P... 0.02 OrthoFinder output from all 47 species
MA_18236g0010 No alias component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.02 OrthoFinder output from all 47 species
Solyc06g083540.4.1 Solyc06g083540 component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.03 OrthoFinder output from all 47 species
Zm00001e005588_P002 Zm00001e005588 component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.05 OrthoFinder output from all 47 species
Zm00001e012088_P003 Zm00001e012088 component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.08 OrthoFinder output from all 47 species
Zm00001e039020_P004 Zm00001e039020 component RPP25/POP6 | RPP20/POP7 of RNA-dependent RNase... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 19 82
No external refs found!