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  5. LOC_Os03g51620.1

LOC_Os03g51620.1 (RXW8, LOC_Os03g51620)


Aliases : RXW8, LOC_Os03g51620

Description : calcium-permeable channel (OSCA)


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g51620.1

Target Alias Description ECC score Gene Family Method Actions
AT3G21620 No alias ERD (early-responsive to dehydration stress) family protein 0.03 OrthoFinder output from all 47 species
AT4G02900 No alias ERD (early-responsive to dehydration stress) family protein 0.01 OrthoFinder output from all 47 species
Adi_g017299 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15665 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Cre08.g360500 No alias CSC1-like protein At1g62320 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g03967 HYP1, ATHYP1 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g12509 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_08557 ERD4 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Len_g15514 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g04480.1 No alias calcium-permeable channel (OSCA) 0.01 OrthoFinder output from all 47 species
Zm00001e005168_P001 RXW8, Zm00001e005168 calcium-permeable channel (OSCA) 0.02 OrthoFinder output from all 47 species
Zm00001e011518_P001 ERD4, Zm00001e011518 calcium-permeable channel (OSCA) 0.03 OrthoFinder output from all 47 species
Zm00001e031717_P002 Zm00001e031717 calcium-permeable channel (OSCA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032880 Csc1/OSCA1-like_N 6 166
IPR027815 CSC1/OSCA1-like_cyt 187 344
IPR003864 CSC1/OSCA1-like_7TM 355 621
No external refs found!