LOC_Os03g50090.2 (LOC_Os03g50090)

Aliases : LOC_Os03g50090

Description : RNA helicase (Prp28)

Gene families : OG0002793 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002793_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g50090.2

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00248520	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Dde_g01633	No alias	RNA helicase *(SMA1) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29389	No alias	RNA helicase *(SMA1) & original description: none	0.04	OrthoFinder output from all 47 species
Smo149865	No alias	RNA processing.RNA splicing.spliceosome...	0.05	OrthoFinder output from all 47 species
Smo165735	No alias	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Solyc02g081290.4.1	Solyc02g081290	RNA helicase (Prp28)	0.03	OrthoFinder output from all 47 species
Spa_g30637	No alias	RNA helicase *(SMA1) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e005420_P001	Zm00001e005420	RNA helicase (Prp28)	0.07	OrthoFinder output from all 47 species
Zm00001e012203_P002	Zm00001e012203	RNA helicase (Prp28)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	340	530
IPR001650	Helicase_C	564	673

External Links

No external refs found!