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  5. LOC_Os03g49900.1

LOC_Os03g49900.1 (LOC_Os03g49900)


Aliases : LOC_Os03g49900

Description : no hits & (original description: none)


Gene families : OG0004649 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g49900.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT1G18470 No alias Transmembrane Fragile-X-F-associated protein 0.03 OrthoFinder output from all 47 species
Cba_g02010 No alias E3 ubiquitin ligase *(PPRT) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.34G011400.1 Ceric.34G011400 E3 ubiquitin ligase *(PPRT) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020604.29 No alias No description available 0.01 OrthoFinder output from all 47 species
Msp_g14303 No alias E3 ubiquitin ligase *(PPRT) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03007 No alias E3 ubiquitin ligase *(PPRT) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23691 No alias E3 ubiquitin ligase *(PPRT) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55256 No alias E3 ubiquitin ligase *(PPRT) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005410_P001 Zm00001e005410 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Zm00001e012214_P002 Zm00001e012214 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR019396 TM_Fragile-X-F-assoc 34 298
No external refs found!