1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g42430.1

LOC_Os03g42430.1 (LOC_Os03g42430)


Aliases : LOC_Os03g42430

Description : transcription factor (REM)


Gene families : OG0004345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004345_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g42430.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00193040 evm_27.TU.AmTr_v1... B3 domain-containing protein Os11g0197600 OS=Oryza... 0.03 OrthoFinder output from all 47 species
AT1G49475 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT1G49480 RTV1 related to vernalization1 1 0.02 OrthoFinder output from all 47 species
AT3G18960 No alias AP2/B3-like transcriptional factor family protein 0.08 OrthoFinder output from all 47 species
AT4G01580 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
GSVIVT01005085001 No alias B3 domain-containing transcription factor VRN1... 0.05 OrthoFinder output from all 47 species
Gb_37792 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g40090.1 LOC_Os12g40090 transcription factor (REM) 0.04 OrthoFinder output from all 47 species
Pir_g27406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g49216 VRN1, REM39 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc00g011660.1.1 Solyc00g011660 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc00g500092.1.1 Solyc00g500092 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc01g013995.2.1 Solyc01g013995 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc01g096790.4.1 Solyc01g096790 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc02g065350.3.1 Solyc02g065350 Putative B3 domain-containing protein Os03g0621600... 0.03 OrthoFinder output from all 47 species
Solyc02g081780.3.1 Solyc02g081780 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 268 340
IPR003340 B3_DNA-bd 42 122
No external refs found!