LOC_Os03g38000.1 (LOC_Os03g38000)

Aliases : LOC_Os03g38000

Description : component RPS3 of SSU proteome

Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g38000.1
Cluster	HCCA: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00219330	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	OrthoFinder output from all 47 species
AMTR_s00030p00157370	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder output from all 47 species
AT2G31610	No alias	Ribosomal protein S3 family protein	0.1	OrthoFinder output from all 47 species
AT3G53870	No alias	Ribosomal protein S3 family protein	0.17	OrthoFinder output from all 47 species
AT5G35530	No alias	Ribosomal protein S3 family protein	0.4	OrthoFinder output from all 47 species
Adi_g083363	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g13531	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ala_g20217	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Als_g06986	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g19714	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Aob_g10608	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g22525	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g10053	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aop_g11605	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Aspi01Gene09649.t1	Aspi01Gene09649	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g18995	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.06G062500.1	Ceric.06G062500	component *(uS3) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Ceric.12G046300.1	Ceric.12G046300	component *(uS3) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021462.41	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.3	OrthoFinder output from all 47 species
Cre02.g102250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.33	OrthoFinder output from all 47 species
Dac_g04101	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dac_g08554	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dac_g21379	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dac_g21380	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dde_g20443	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ehy_g13853	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ehy_g13854	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01015110001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	OrthoFinder output from all 47 species
GSVIVT01016775001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.21	OrthoFinder output from all 47 species
GSVIVT01035451001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	OrthoFinder output from all 47 species
Gb_13623	No alias	component RPS3 of SSU proteome	0.18	OrthoFinder output from all 47 species
Gb_26536	No alias	component RPS3 of SSU proteome	0.18	OrthoFinder output from all 47 species
Gb_26539	No alias	component RPS3 of SSU proteome	0.02	OrthoFinder output from all 47 species
Len_g01019	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g12476	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g25979	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_10436283g0010	No alias	component RPS3 of SSU proteome	0.16	OrthoFinder output from all 47 species
MA_120861g0010	No alias	component RPS3 of SSU proteome	0.16	OrthoFinder output from all 47 species
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.4	OrthoFinder output from all 47 species
Msp_g00955	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Msp_g08961	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g02786	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Pir_g11610	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Pir_g61345	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c11_22640V3.1	Pp3c11_22640	Ribosomal protein S3 family protein	0.28	OrthoFinder output from all 47 species
Pp3c15_21360V3.1	Pp3c15_21360	Ribosomal protein S3 family protein	0.14	OrthoFinder output from all 47 species
Pp3c16_3760V3.1	Pp3c16_3760	Ribosomal protein S3 family protein	0.09	OrthoFinder output from all 47 species
Pp3c5_5330V3.1	Pp3c5_5330	Ribosomal protein S3 family protein	0.12	OrthoFinder output from all 47 species
Pp3c7_2620V3.1	Pp3c7_2620	Ribosomal protein S3 family protein	0.16	OrthoFinder output from all 47 species
Pp3c9_12170V3.1	Pp3c9_12170	Ribosomal protein S3 family protein	0.2	OrthoFinder output from all 47 species
Ppi_g22437	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013681	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g27040	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g27041	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Smo270414	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
Smo270666	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
Smo438700	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Solyc07g041310.3.1	Solyc07g041310	component RPS3 of SSU proteome	0.29	OrthoFinder output from all 47 species
Solyc08g061843.1.1	Solyc08g061843	component RPS3 of SSU proteome	0.32	OrthoFinder output from all 47 species
Spa_g10670	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g10671	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g10672	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Spa_g21286	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Spa_g24354	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g30478	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Spa_g51511	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Spa_g54393	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g54394	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g04971	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Tin_g05376	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g05397	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e021687_P001	Zm00001e021687	component RPS3 of SSU proteome	0.41	OrthoFinder output from all 47 species
Zm00001e035528_P001	Zm00001e035528	component RPS3 of SSU proteome	0.04	OrthoFinder output from all 47 species
Zm00001e040177_P002	Zm00001e040177	component RPS3 of SSU proteome	0.38	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	106	188
IPR004044	KH_dom_type_2	20	93

External Links

No external refs found!

LOC_Os03g38000.1 (LOC_Os03g38000)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation