1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g04680.1

LOC_Os02g04680.1


Description : transcription factor (SBP)


Gene families : OG_01_0000102 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000102_tree ,
OG_02_0000092 (LandPlants) Phylogenetic Tree(s): OG_02_0000092_tree ,
OG_03_0000075 (SeedPlants) Phylogenetic Tree(s): OG_03_0000075_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g04680.1
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00150040 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
AMTR_s00019p00235390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.06 Archaeplastida
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.02 Archaeplastida
AT1G20980 SPL1R2, ATSPL14,... squamosa promoter binding protein-like 14 0.06 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.02 Archaeplastida
AT2G42200 AtSPL9, SPL9 squamosa promoter binding protein-like 9 0.05 Archaeplastida
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.03 Archaeplastida
GSVIVT01003836001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01010496001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01033519001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
Gb_03921 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_26600 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_32703 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_37539 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_41517 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os01g18850.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os02g07780.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os02g08070.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.01 Archaeplastida
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.01 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.02 Archaeplastida
MA_20537g0010 No alias transcription factor (SBP) 0.02 Archaeplastida
MA_7789506g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Mp1g10020.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Mp1g10030.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Pp3c12_24350V3.1 No alias squamosa promoter binding protein-like 8 0.01 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.01 Archaeplastida
Pp3c25_8610V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.02 Archaeplastida
Pp3c5_22750V3.1 No alias squamosa promoter binding protein-like 8 0.01 Archaeplastida
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.01 Archaeplastida
Solyc05g015510.3.1 No alias transcription factor (SBP) 0.07 Archaeplastida
Solyc07g053810.3.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc10g018780.3.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc12g038520.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003546_P002 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e013198_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e030416_P001 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.01 Archaeplastida
Zm00001e037693_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.01 Archaeplastida
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.02 LandPlants
AMTR_s00106p00142470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.01 LandPlants
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.03 LandPlants
GSVIVT01003836001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 LandPlants
Gb_26600 No alias no hits & (original description: none) 0.02 LandPlants
Gb_32703 No alias transcription factor (SBP) 0.02 LandPlants
LOC_Os02g07780.1 No alias transcription factor (SBP) 0.02 LandPlants
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.01 LandPlants
MA_20537g0010 No alias transcription factor (SBP) 0.02 LandPlants
MA_7789506g0010 No alias no hits & (original description: none) 0.04 LandPlants
Mp1g10020.1 No alias transcription factor (SBP) 0.01 LandPlants
Pp3c25_8610V3.1 No alias squamosa promoter binding protein-like 8 0.02 LandPlants
Pp3c6_6900V3.1 No alias squamosa promoter binding protein-like 8 0.01 LandPlants
Solyc03g114850.4.1 No alias no hits & (original description: none) 0.04 LandPlants
Solyc05g015510.3.1 No alias transcription factor (SBP) 0.07 LandPlants
Solyc07g053810.3.1 No alias transcription factor (SBP) 0.04 LandPlants
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.01 LandPlants
Solyc10g018780.3.1 No alias transcription factor (SBP) 0.02 LandPlants
Solyc12g038520.3.1 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e003546_P002 No alias transcription factor (SBP) 0.02 LandPlants
Zm00001e034537_P001 No alias transcription factor (SBP) 0.01 LandPlants
Zm00001e041526_P001 No alias transcription factor (SBP) 0.01 LandPlants
AMTR_s00047p00197010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.02 SeedPlants
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.03 SeedPlants
GSVIVT01003836001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 SeedPlants
LOC_Os02g07780.1 No alias transcription factor (SBP) 0.02 SeedPlants
LOC_Os08g41940.1 No alias transcription factor (SBP) 0.01 SeedPlants
Solyc03g114850.4.1 No alias no hits & (original description: none) 0.04 SeedPlants
Solyc07g053810.3.1 No alias transcription factor (SBP) 0.04 SeedPlants
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.01 SeedPlants
Solyc12g038520.3.1 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e003546_P002 No alias transcription factor (SBP) 0.02 SeedPlants
Zm00001e034537_P001 No alias transcription factor (SBP) 0.01 SeedPlants
Zm00001e041526_P001 No alias transcription factor (SBP) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004333 SBP_dom 182 255
No external refs found!