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  5. LOC_Os03g29460.1

LOC_Os03g29460.1 (LOC_Os03g29460)


Aliases : LOC_Os03g29460

Description : component RPL27a of LSU proteome component


Gene families : OG0001601 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001601_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g29460.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00158350 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
AMTR_s00130p00058120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT1G23290 RPL27AB, RPL27A Ribosomal protein L18e/L15 superfamily protein 0.11 OrthoFinder output from all 47 species
AT1G70600 No alias Ribosomal protein L18e/L15 superfamily protein 0.12 OrthoFinder output from all 47 species
Adi_g121633 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g128537 RPL27AB, RPL27A component *(uL15) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g05509 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g19375 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g06147 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aop_g21837 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g70429 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0167.g054511 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0617.g079530 RPL27AB, RPL27A component *(uL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g68308 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.29G012700.1 Ceric.29G012700 component *(uL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cre02.g115200 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Dac_g01203 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01004075001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01007667001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01032405001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Gb_05659 No alias component RPL27a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Lfl_g25920 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_102140g0020 No alias component RPL27a of LSU proteome component 0.04 OrthoFinder output from all 47 species
MA_10436259g0020 No alias component RPL27a of LSU proteome component 0.07 OrthoFinder output from all 47 species
Mp1g15440.1 No alias component RPL27a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp5g00120.1 No alias component RPL27a of LSU proteome component 0.06 OrthoFinder output from all 47 species
Msp_g01324 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Nbi_g40282 RPL27AB, RPL27A component *(uL15) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g07102 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g29637 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c16_22430V3.1 Pp3c16_22430 Ribosomal protein L18e/L15 superfamily protein 0.05 OrthoFinder output from all 47 species
Pp3c20_18830V3.1 Pp3c20_18830 Ribosomal protein L18e/L15 superfamily protein 0.02 OrthoFinder output from all 47 species
Pp3c25_13260V3.1 Pp3c25_13260 Ribosomal protein L18e/L15 superfamily protein 0.04 OrthoFinder output from all 47 species
Pp3c6_3470V3.1 Pp3c6_3470 Ribosomal protein L18e/L15 superfamily protein 0.03 OrthoFinder output from all 47 species
Pp3c8_5770V3.1 Pp3c8_5770 Ribosomal protein L18e/L15 superfamily protein 0.06 OrthoFinder output from all 47 species
Ppi_g09866 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0133.g022228 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g25032 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g25695 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g47290 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g48454 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Smo165371 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc03g112360.1.1 Solyc03g112360 component RPL27a of LSU proteome component 0.14 OrthoFinder output from all 47 species
Solyc06g071720.1.1 Solyc06g071720 component RPL27a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Spa_g03362 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g17344 RPL27AB, RPL27A component *(uL15) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Tin_g02964 No alias component *(uL15) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e010753_P001 Zm00001e010753 component RPL27a of LSU proteome component 0.16 OrthoFinder output from all 47 species
Zm00001e035537_P001 Zm00001e035537 component RPL27a of LSU proteome component 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 28 143
No external refs found!