LOC_Os03g27080.1 (CAMTA3, SR1, LOC_Os03g27080)

Aliases : CAMTA3, SR1, LOC_Os03g27080

Description : transcription factor (CAMTA)

Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g27080.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00173360	CAMTA3, SR1,...	RNA biosynthesis.transcriptional activation.CAMTA...	0.04	OrthoFinder output from all 47 species
AT2G22300	CAMTA3, SR1	signal responsive 1	0.1	OrthoFinder output from all 47 species
AT4G16150	No alias	calmodulin binding;transcription regulators	0.03	OrthoFinder output from all 47 species
AT5G09410	EICBP.B, CAMTA1	ethylene induced calmodulin binding protein	0.02	OrthoFinder output from all 47 species
Aev_g01603	CAMTA3, SR1	CAMTA-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene51851.t1	Aspi01Gene51851	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.12G055700.1	CAMTA3, SR1,...	CAMTA-type transcription factor & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.24G013800.1	CAMTA3, SR1,...	CAMTA-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.31G019600.1	Ceric.31G019600	CAMTA-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Dde_g18187	No alias	CAMTA-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g10015	No alias	CAMTA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01002635001	No alias	No description available	0.05	OrthoFinder output from all 47 species
GSVIVT01004860001	CAMTA3, SR1	RNA biosynthesis.transcriptional activation.CAMTA...	0.09	OrthoFinder output from all 47 species
GSVIVT01010510001	No alias	RNA biosynthesis.transcriptional activation.CAMTA...	0.11	OrthoFinder output from all 47 species
GSVIVT01035027001	No alias	RNA biosynthesis.transcriptional activation.CAMTA...	0.04	OrthoFinder output from all 47 species
Gb_04014	No alias	transcription factor (CAMTA)	0.06	OrthoFinder output from all 47 species
LOC_Os07g30774.1	LOC_Os07g30774	transcription factor (CAMTA)	0.04	OrthoFinder output from all 47 species
Len_g16770	CAMTA3, SR1	CAMTA-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g34966	CAMTA3, SR1	CAMTA-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Mp7g03150.1	CAMTA3, SR1	transcription factor (CAMTA)	0.03	OrthoFinder output from all 47 species
Msp_g12572	No alias	CAMTA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g35915	CAMTA3, SR1	CAMTA-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010659	No alias	CAMTA-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g07183	No alias	CAMTA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g105230.4.1	Solyc01g105230	transcription factor (CAMTA)	0.03	OrthoFinder output from all 47 species
Solyc04g056270.4.1	CAMTA3, SR1,...	transcription factor (CAMTA)	0.09	OrthoFinder output from all 47 species
Zm00001e012888_P005	CAMTA3, SR1,...	transcription factor (CAMTA)	0.03	OrthoFinder output from all 47 species
Zm00001e037974_P002	CAMTA3, SR1,...	transcription factor (CAMTA)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0045927	positive regulation of growth	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000048	IQ_motif_EF-hand-BS	394	413
IPR000048	IQ_motif_EF-hand-BS	370	389
IPR020683	DUF3447	166	256

External Links

No external refs found!

LOC_Os03g27080.1 (CAMTA3, SR1, LOC_Os03g27080)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation