LOC_Os03g25620.1 (LOC_Os03g25620)

Aliases : LOC_Os03g25620

Description : Ltv1 pre-40S subunit nuclear export factor

Gene families : OG0005345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005345_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g25620.1
Cluster	HCCA: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
Als_g03704	No alias	pre-40S ribosomal-subunit proteome nuclear export factor...	0.02	OrthoFinder output from all 47 species
Aob_g05179	No alias	pre-40S ribosomal-subunit proteome nuclear export factor...	0.04	OrthoFinder output from all 47 species
Ceric.06G033100.1	Ceric.06G033100	pre-40S ribosomal-subunit proteome nuclear export factor...	0.04	OrthoFinder output from all 47 species
Cre02.g146000	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g02892	No alias	pre-40S ribosomal-subunit proteome nuclear export factor...	0.02	OrthoFinder output from all 47 species
Gb_13741	No alias	Ltv1 pre-40S subunit nuclear export factor	0.02	OrthoFinder output from all 47 species
Solyc04g081030.3.1	Solyc04g081030	Ltv1 pre-40S subunit nuclear export factor	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0042274	ribosomal small subunit biogenesis	IEA	Interproscan
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0034457	Mpp10 complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007307	Ltv1	281	471

External Links

No external refs found!