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  5. LOC_Os03g24220.2

LOC_Os03g24220.2 (ATVLN2, VLN2, LOC_Os03g24220)


Aliases : ATVLN2, VLN2, LOC_Os03g24220

Description : villin actin-crosslinking factor


Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g24220.2
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT2G41740 ATVLN2, VLN2 villin 2 0.04 OrthoFinder output from all 47 species
AT5G57320 VLN5 villin, putative 0.03 OrthoFinder output from all 47 species
Aop_g38086 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09197.t1 ATVLN2, VLN2,... villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72062.t1 VLN4, ATVLN4,... villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001366.21 ATVLN2, VLN2 Cytoskeleton.microfilament network.actin... 0.01 OrthoFinder output from all 47 species
Cre12.g524400 VLN4, ATVLN4 No description available 0.01 OrthoFinder output from all 47 species
Cre12.g555550 ATVLN3, VLN3 Cytoskeleton.microfilament network.actin... 0.01 OrthoFinder output from all 47 species
Dcu_g07151 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_40002 VLN4, ATVLN4 villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
LOC_Os05g06110.1 VLN1, ATVLN1,... villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
MA_10430359g0030 ATVLN2, VLN2 Villin-2 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
Mp7g09750.1 ATVLN2, VLN2 villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
Pir_g42086 VLN1, ATVLN1 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g45407 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g06385 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55666 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e031068_P001 VLN1, ATVLN1,... villin actin-crosslinking factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 29 112
IPR007123 Gelsolin-like_dom 150 221
IPR007123 Gelsolin-like_dom 273 338
IPR007123 Gelsolin-like_dom 535 604
IPR007123 Gelsolin-like_dom 414 487
No external refs found!