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  5. LOC_Os03g22830.2

LOC_Os03g22830.2 (RHC1A, LOC_Os03g22830)


Aliases : RHC1A, LOC_Os03g22830

Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 234.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22830.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00169380 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT4G26400 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G64920 CIP8 COP1-interacting protein 8 0.03 OrthoFinder output from all 47 species
Adi_g018009 ATCRT1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066616 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0149.g053204 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g05833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G095600.1 Ceric.07G095600 not classified & original description: pacid=50626992... 0.02 OrthoFinder output from all 47 species
Cre10.g422050 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dcu_g46359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51480 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g40980.1 LOC_Os05g40980 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g11583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27550 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pnu_g08831 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g49023 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ppi_g62548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012286 No alias not classified & original description: CDS=1-1674 0.02 OrthoFinder output from all 47 species
Sam_g05898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g17099 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 6 37
IPR001841 Znf_RING 186 228
No external refs found!