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  5. LOC_Os03g22770.1

LOC_Os03g22770.1 (LOC_Os03g22770)


Aliases : LOC_Os03g22770

Description : transcription factor (BBX-CO)


Gene families : OG0001765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001765_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22770.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT3G21150 BBX32 B-box 32 0.03 OrthoFinder output from all 47 species
AT4G15248 No alias B-box type zinc finger family protein 0.03 OrthoFinder output from all 47 species
AT4G27310 No alias B-box type zinc finger family protein 0.05 OrthoFinder output from all 47 species
AT5G54470 No alias B-box type zinc finger family protein 0.02 OrthoFinder output from all 47 species
Aev_g05370 No alias BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13386 No alias BBX class-V transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04708 No alias BBX class-V transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g03511 No alias BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29917 No alias BBX class-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31532 No alias BBX class-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000440001 No alias No description available 0.04 OrthoFinder output from all 47 species
Lfl_g03876 No alias BBX class-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12470 COL9 BBX class-V transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g21794 No alias BBX class-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g20050.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g09193 No alias BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29208 No alias BBX class-V transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39680 No alias BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33590 STH2 BBX class-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo49712 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc07g053140.3.1 Solyc07g053140 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Zm00001e001660_P002 Zm00001e001660 Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e021664_P001 Zm00001e021664 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e025117_P001 Zm00001e025117 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e039937_P001 Zm00001e039937 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 358 400
No external refs found!