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LOC_Os03g22680.1 (LOC_Os03g22680)


Aliases : LOC_Os03g22680

Description : E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica (sp|q10li1|srfp1_orysj : 452.0)


Gene families : OG0002193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22680.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g05270.1 LOC_Os03g05270 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10429565g0010 No alias Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Msp_g01038 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g02904 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e004657_P008 Zm00001e004657 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 145 189
IPR039512 RCHY1_zinc-ribbon 194 251
IPR008913 Znf_CHY 18 92
No external refs found!